1UHV

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Structural Biology Knowledgebase: 1UHV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UHV

Classification: HYDROLASE

Total Structure Weight: 235504.09

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-xylosidase A, B, C, D 500 Thermoanaerobacterium saccharolyticum EC#: 3.2.1.37 IUBMB
Mutation: T230Y
Gene Name(s): xynB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DFX
Query on DFX

A, B, C, D 1,2-DEOXY-2-FLUORO-XYLOPYRANOSE
C5 H9 F O3
YIJTWYXBSRZXRS-VPENINKCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.210
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.33 α = 90.00
b = 152.28 β = 90.00
c = 159.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-11
  • Released Date: 2003-12-23
  • Deposition author(s): Yang, J.K., Yoon, H.J., Ahn, H.J., Il Lee, B., Pedelacq, J.D., Liong, E.C., Berendzen, J., Laivenieks, M., Vieille, C., Zeikus, G.J., Vocadlo, D.J., Withers, S.G., Suh, S.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4