1UBD

CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT

Structural Biology Knowledgebase: 1UBD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1UBD

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 26719.14


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (YY1 ZINC FINGER DOMAIN) C 124 Homo sapiens Mutation: D291M, A292E
Gene Name(s): YY1 Gene View INO80S
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3') A 20 synthetic
DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3') B 20 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.212
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 44.00 α = 90.00
b = 65.70 β = 90.00
c = 117.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-10-04
  • Released Date: 1996-12-23
  • Deposition author(s): Houbaviy, H.B., Usheva, A., Shenk, T., Burley, S.K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4