1TMO

TRIMETHYLAMINE N-OXIDE REDUCTASE FROM SHEWANELLA MASSILIA

Structural Biology Knowledgebase: 1TMO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1TMO

Classification: OXIDOREDUCTASE

Total Structure Weight: 94090.63

Macromolecule Entities
Molecule Chains Length Organism Details
TRIMETHYLAMINE N-OXIDE REDUCTASE A 829 Shewanella massilia EC#: 1.6.6.9 IUBMB
Gene Name(s): torA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2MD
Query on 2MD

A GUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO- 5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A- OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN- 7-YLMETHYL) ESTER
MOLYBDENUM COFACTOR,BIS (MOLYBDOPTERIN GUANINE DINUCLEOTIDE) (Synonym)
C20 H28 N10 O13 P2 S2
YDYCAANTTOPADF-JKOCJXFLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
2MO
Query on 2MO

A MOLYBDENUM (IV)OXIDE
Mo O2
QXYJCZRRLLQGCR-OMUOWVJPAU
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.182
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 123.32 α = 90.00
b = 140.70 β = 90.00
c = 59.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-03
  • Released Date: 1999-03-30
  • Deposition author(s): Czjzek, M., Dos Santos, J.P., Giordano, G., Mejean, V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4