1TE2

Putative Phosphatase Ynic from Escherichia coli K12

Structural Biology Knowledgebase: 1TE2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.174

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1TE2

Classification: HYDROLASE

Total Structure Weight: 50610.19

Macromolecule Entities
Molecule Chains Length Organism Details
2-deoxyglucose-6-P phosphatase A, B 226 Escherichia coli EC#: 3.1.3.18 IUBMB
Gene Name(s): yniC b1727 JW1716

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGA
Query on PGA

A, B 2-PHOSPHOGLYCOLIC ACID
C2 H5 O6 P
ASCFNMCAHFUBCO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.174
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.59 α = 90.00
b = 88.45 β = 97.26
c = 48.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-05-24
  • Released Date: 2004-08-03
  • Deposition author(s): Kim, Y., Joachimiak, A., Evdokimova, E., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2015-06-24
    Type: Source and taxonomy | Details: update Taxonomy ID
  • 2015-06-17
    Type: Source and taxonomy | Details: update Taxonomy ID
  • 2015-06-17
    Type: Polymer description | Details: update protein name
  • 2015-06-17
    Type: Sequence database correspondence | Details: update DBREF record
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name