1TDJ

THREONINE DEAMINASE (BIOSYNTHETIC) FROM E. COLI

Structural Biology Knowledgebase: 1TDJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.340
  • R-Value Work: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1TDJ

Classification: ALLOSTERY

Total Structure Weight: 56510.84

Macromolecule Entities
Molecule Chains Length Organism Details
BIOSYNTHETIC THREONINE DEAMINASE A 514 Escherichia coli EC#: 4.3.1.19 IUBMB
Details: SCHIFF BASE LINKAGE BETWEEN LYS 62 AND PLP
Gene Name(s): ilvA b3772 JW3745

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.340
  • R-Value Work: 0.200
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.10 α = 90.00
b = 90.80 β = 90.00
c = 162.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-03-27
  • Released Date: 1998-10-14
  • Deposition author(s): Gallagher, D.T., Gilliland, G.L., Xiao, G., Eisenstein, E.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4