1T3Q

Crystal structure of quinoline 2-Oxidoreductase from Pseudomonas Putida 86

Structural Biology Knowledgebase: 1T3Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1T3Q

Classification: OXIDOREDUCTASE

Total Structure Weight: 271600.22

Macromolecule Entities
Molecule Chains Length Organism Details
quinoline 2-oxidoreductase small subunit A, D 168 Pseudomonas putida EC#: 1.3.99.17 IUBMB
Gene Name(s): qorS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
quinoline 2-oxidoreductase large subunit B, E 788 Pseudomonas putida EC#: 1.3.99.17 IUBMB
Mutation: D465E, C466V
Gene Name(s): qorL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
quinoline 2-oxidoreductase medium subunit C, F 288 Pseudomonas putida EC#: 1.3.99.17 IUBMB
Gene Name(s): qorM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

C, F FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MCN
Query on MCN

B, E PTERIN CYTOSINE DINUCLEOTIDE
C19 H22 N8 O13 P2 S2
RBWYFPNWTRZKKZ-LOIMWUFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

A, D FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SMO
Query on SMO

B, E DIOXOSULFIDOMOLYBDENUM(VI) ION
Mo O2 S
BSDYLDOYZVCHEU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, E, F GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.186
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 278.32 α = 90.00
b = 72.10 β = 127.98
c = 202.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-04-27
  • Released Date: 2004-09-14
  • Deposition author(s): Bonin, I., Martins, B.M., Purvanov, V., Fetzner, S., Huber, R., Dobbek, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update