1SVD

The structure of Halothiobacillus neapolitanus RuBisCo

Structural Biology Knowledgebase: 1SVD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SVD

Classification: LYASE

Total Structure Weight: 65853.98

Macromolecule Entities
Molecule Chains Length Organism Details
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit A 473 Halothiobacillus neapolitanus EC#: 4.1.1.39 IUBMB
Gene Name(s): cbbL Hneap_0922
Ribulose bisphosphate carboxylase small chain M 110 Halothiobacillus neapolitanus EC#: 4.1.1.39 IUBMB
Gene Name(s): cbbS rbcS Hneap_0921

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

M GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.145
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.07 α = 90.00
b = 157.07 β = 90.00
c = 107.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-03-29
  • Released Date: 2005-04-12
  • Deposition author(s): Kerfeld, C.A., Sawaya, M.R., Pashkov, I., Cannon, G., Williams, E., Tran, K., Yeates, T.O.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4