1SHW

EphB2 / EphrinA5 Complex Structure

Structural Biology Knowledgebase: 1SHW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.258

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SHW

Classification: hormone / growth factor / receptor

Total Structure Weight: 37898.18

Macromolecule Entities
Molecule Chains Length Organism Details
Ephrin-A5 A 138 Mus musculus Gene Name(s): Efna5 Epl7 Eplg7 Lerk7
Ephrin type-B receptor 2 B 181 Mus musculus EC#: 2.7.10.1 IUBMB
Gene Name(s): Ephb2 Epth3 Nuk Sek3

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.258
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.89 α = 90.00
b = 88.97 β = 90.00
c = 122.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-26
  • Released Date: 2004-05-18
  • Deposition author(s): Himanen, J.P., Chumley, M.J., Lackmann, M., Li, C., Barton, W.A., Jeffrey, P.D., Vearing, C., Geleick, D., Feldheim, D.A., Boyd, A.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update