1SGF

CRYSTAL STRUCTURE OF 7S NGF: A COMPLEX OF NERVE GROWTH FACTOR WITH FOUR BINDING PROTEINS (SERINE PROTEINASES)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.246

Literature

Macromolecules
Sequence Display for 1SGF

Classification: GROWTH FACTOR

Total Structure Weight: 134442.94

Macromolecule Entities
Molecule Chains Length Organism Details
NERVE GROWTH FACTOR A, X 240 Mus musculus EC#: 3.4.21.35 IUBMB
Gene Name(s): Klk1b4 Klk-4 Klk4 Ngfa
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NERVE GROWTH FACTOR B, Y 118 Mus musculus EC#: 3.4.21.35 IUBMB
Gene Name(s): Ngf Ngfb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NERVE GROWTH FACTOR G, Z 237 Mus musculus EC#: 3.4.21.35 IUBMB
Gene Name(s): Klk1b3 Klk-3 Klk3 Ngfg
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

Z 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, G, X, Z N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, X ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.246
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 95.68 α = 90.00
b = 96.59 β = 90.00
c = 147.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-08-08
  • Released Date: 1998-05-27
  • Deposition author(s): Bax, B.D.V., Blundell, T.L., Murray-Rust, J., Mcdonald, N.Q.

Revision History

  • Version 1_0: 1998-05-27

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance