1SD1

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH FORMYCIN A

Structural Biology Knowledgebase: 1SD1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1SD1

Classification: TRANSFERASE

Total Structure Weight: 31544.50

Macromolecule Entities
Molecule Chains Length Organism Details
5'-methylthioadenosine phosphorylase A 283 Homo sapiens EC#: 2.4.2.28 IUBMB
Mutation: I56V
Gene Name(s): MTAP Gene View MSAP

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMC
Query on FMC

A (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin- 3-yl)-1,4-anhydro-D-ribitol
C10 H13 N5 O4
KBHMEHLJSZMEMI-KSYZLYKTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.03 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.180
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.00 α = 90.00
b = 121.00 β = 90.00
c = 44.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-02-12
  • Released Date: 2004-05-18
  • Deposition author(s): Lee, J.E., Settembre, E.C., Cornell, K.A., Riscoe, M.K., Sufrin, J.R., Ealick, S.E., Howell, P.L.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4