1S3E

Crystal structure of MAOB in complex with 6-hydroxy-N-propargyl-1(R)-aminoindan

Structural Biology Knowledgebase: 1S3E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1S3E

Classification: OXIDOREDUCTASE

Total Structure Weight: 119247.72

Macromolecule Entities
Molecule Chains Length Organism Details
Amine oxidase [flavin-containing] B A, B 520 Homo sapiens EC#: 1.4.3.4 IUBMB
Gene Name(s): MAOB Gene View

Membrane Protein

Source: inferred by homology | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Oxidases

Protein Name: Monoamine Oxidase B


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RHP
Query on RHP

A, B (3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL
5-HYDROXY-N-PROPARGYL-1(R)-AMINOINDAN (Synonym)
C12 H13 N O
NRSDGDXUWMMUEV-GFCCVEGCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RHP IC50: 230 nM (88) BindingDB
Ki: 17000 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.198
  • Space Group: C 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 131.96 α = 90.00
b = 224.07 β = 90.00
c = 86.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-01-13
  • Released Date: 2004-03-30
  • Deposition author(s): Binda, C., Hubalek, F., Li, M., Herzig, Y., Sterling, J., Edmondson, D.E., Mattevi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4