1OJ7

STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD

Structural Biology Knowledgebase: 1OJ7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1OJ7

Classification: OXIDOREDUCTASE

Total Structure Weight: 181462.28

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOTHETICAL OXIDOREDUCTASE YQHD A, B, C, D 408 Escherichia coli EC#: 1.1.1 IUBMB
Mutation: Q213H
Gene Name(s): yqhD b3011 JW2978
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NZQ
Query on NZQ

A, B, D 5,6-DIHYDROXY-NADP
C21 H32 N7 O19 P3
LRAVAOPKUBJONV-IVCJQJMGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BO3
Query on BO3

A, C BORIC ACID
B H3 O3
KGBXLFKZBHKPEV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.145
  • Space Group: P 62
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 237.93 α = 90.00
b = 237.93 β = 90.00
c = 66.74 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-03
  • Released Date: 2004-07-08
  • Deposition author(s): Sulzenbacher, G., Perrier, S., Roig-Zamboni, V., Pagot, F., Grisel, S., Salamoni, A., Valencia, C., Bignon, C., Vincentelli, R., Tegoni, M., Cambillau, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4