1O47

CRYSTAL STRUCTURE OF SH2 IN COMPLEX WITH RU82209.

Structural Biology Knowledgebase: 1O47 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1O47

Classification: SIGNALING PROTEIN

Total Structure Weight: 12988.70

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC A 108 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: SH2 DOMAIN
Gene Name(s): SRC Gene View SRC1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
822
Query on 822

A N-ACETYL-N-[1-(1,1'-BIPHENYL-4-YLMETHYL)- 2-OXOAZEPAN-3-YL]-4-[DIFLUORO(PHOSPHONO)METHYL]PHENYLALANINAMIDE
RU82209 (Synonym)
C31 H34 F2 N3 O6 P
LVZDQVATAQEMCX-NSOVKSMOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
822 IC50: 4 - 5 nM (100) BindingDB

IC50: 4 nM  BindingMOAD
IC50: 4 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Observed: 0.192
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 26.59 α = 90.00
b = 59.02 β = 90.00
c = 65.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-15
  • Released Date: 2004-02-17
  • Deposition author(s): Lange, G., Loenze, P., Liesum, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4