1NY6

Crystal structure of sigm54 activator (AAA+ ATPase) in the active state

Structural Biology Knowledgebase: 1NY6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.266

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NY6

Classification: TRANSCRIPTION

Total Structure Weight: 434642.97

Macromolecule Entities
Molecule Chains Length Organism Details
transcriptional regulator (NtrC family) A, B, C..., D, E, F, G, H, I, J, K, L, M, NA, B, C, D, E, F, G, H, I, J, K, L, M, N 267 Aquifex aeolicus Fragment: residues 122-387
Gene Name(s): ntrC1 aq_1117

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D, E, F, G, H, I, J, K, L, M, N ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.266
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.79 α = 70.25
b = 108.26 β = 85.90
c = 110.02 γ = 73.27

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-11
  • Released Date: 2003-11-11
  • Deposition author(s): Lee, S.Y., de la Torre, A., Kustu, S., Nixon, B.T., Wemmer, D.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4