1NME

Structure of Casp-3 with tethered salicylate

Structural Biology Knowledgebase: 1NME SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NME

Classification: APOPTOSIS HYDROLASE

Total Structure Weight: 27872.04

Macromolecule Entities
Molecule Chains Length Organism Details
Caspase-3 A 146 Homo sapiens EC#: 3.4.22.56 IUBMB
Fragment: large subunit
Gene Name(s): CASP3 Gene View CPP32
Caspase-3 B 92 Homo sapiens EC#: 3.4.22.56 IUBMB
Fragment: small subunit
Gene Name(s): CASP3 Gene View CPP32

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
159
Query on 159

B 2-HYDROXY-5-(2-MERCAPTO-ETHYLSULFAMOYL)-BENZOIC ACID
C9 H11 N O5 S2
UCQUNSCHVXCSCJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
158
Query on 158

A 3-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID
C7 H11 N O4 S
BSLDCFOJAJXQLY-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.172
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.49 α = 90.00
b = 83.60 β = 90.00
c = 95.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-09
  • Released Date: 2003-03-11
  • Deposition author(s): Erlanson, D.A., Lam, J., Wiesmann, C., Luong, T.N., Simmons, B., DeLano, W., Choong, I.C., Flanagan, M., Lee, D., O'Brian, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4