1NGP

N1G9 (IGG1-LAMBDA) FAB FRAGMENT COMPLEXED WITH (4-HYDROXY-3-NITROPHENYL) ACETATE

Structural Biology Knowledgebase: 1NGP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1NGP

Classification: IMMUNOGLOBULIN

Total Structure Weight: 47505.11

Macromolecule Entities
Molecule Chains Length Organism Details
N1G9 (IGG1-LAMBDA) L 215 Mus musculus Fragment: FAB FRAGMENT
Gene Name(s):
N1G9 (IGG1-LAMBDA) H 222 Mus musculus Fragment: FAB FRAGMENT
Mutation: E1Q, K3Q, H5Q, E6Q, S7P, P9A, G10E, R13K, T16A, I20L, N31S, L34M, G35H, H43R, D50R, Y52D, G54N, G55S, Y57G, N59K, G66S, A72V, T74K, S75P, F95Y, F100D, ΔY126, ΔW127, V109Y, V116L, T194P
Gene Name(s): Ighv1-72 Gm16709

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NPA
Query on NPA

H 2-(4-HYDROXY-3-NITROPHENYL)ACETIC ACID
C8 H7 N O5
QBHBHOSRLDPIHG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.196
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 110.69 α = 90.00
b = 110.69 β = 90.00
c = 98.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-06-23
  • Released Date: 1996-07-11
  • Deposition author(s): Mizutani, R., Satow, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4