1N6Q

HIV-1 Reverse Transcriptase Crosslinked to pre-translocation AZTMP-terminated DNA (complex N)

Structural Biology Knowledgebase: 1N6Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.247

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1N6Q

Classification: TRANSFERASE / IMMUNE SYSTEM / DNA

Total Structure Weight: 177116.09


Macromolecule Entities
Molecule Chains Length Organism Details
Reverse Transcriptase A 558 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: Q258C, C280S
Details: p66
Gene Name(s): gag-pol
Reverse Transcriptase B 430 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280S
Details: p51
Gene Name(s): gag-pol
Monoclonal Antibody (Light Chain) L 211 Mus musculus Fragment: FAB 28
Gene Name(s):
Monoclonal Antibody (Heavy Chain) H 225 Mus musculus Fragment: FAB 28
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*T*GP*CP*AP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3' T 27 synthetic DNA template
5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*AP*(ATM))-3' P 22 synthetic DNA primer

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MRG
Query on MRG
P DNA LINKING C13 H20 N5 O7 P S DG
ATM
Query on ATM
P DNA LINKING C10 H14 N5 O7 P DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.247
  • Space Group: P 32 1 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 166.35 α = 90.00
b = 166.35 β = 90.00
c = 220.96 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-11
  • Released Date: 2003-01-14
  • Deposition author(s): Sarafianos, S.G., Clark Jr., A.D., Das, K., Tuske, S., Birktoft, J.J., Ilankumaran, I., Ramesha, A.R., Sayer, J.M., Jerina, D.M., Boyer, P.L., Hughes, S.H., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4