1N1E

Crystal structure of Leishmania mexicana Glycerol-3-phosphate dehydrogenase complexed with DHAP and NAD

Structural Biology Knowledgebase: 1N1E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 1N1E

Classification: OXIDOREDUCTASE

Total Structure Weight: 80299.22

Macromolecule Entities
Molecule Chains Length Organism Details
glycerol-3-phosphate dehydrogenase A, B 366 Leishmania mexicana EC#: 1.1.1.8 IUBMB
Gene Name(s): GPD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDE
Query on NDE

A, B ADENOSINE 5'-(TRIHYDROGEN DIPHOSPHATE) P'- 5'-ESTER WITH 3-(AMINOCARBONYL)-4-(1-HYDROXYL- 2-OXO-3-PHOSPHONOOXY-PROPYL)-1-BETA-D-RIBOFURANOSYLPYRIDINIUM INNER SALT
NAD WITH (1-HYDROXYL-2-OXO-3-PHOSPHONOOXY- PROPANE) (Synonym)
C24 H32 N7 O20 P3
IVZPTIKSOMOSEU-WPIGAQFXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.173
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.75 α = 90.00
b = 77.75 β = 90.00
c = 266.63 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-17
  • Released Date: 2003-05-27
  • Deposition author(s): Choe, J., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4