1MJH

Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics

Structural Biology Knowledgebase: 1MJH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1MJH

Classification: HYPOTHETICAL PROTEIN

Total Structure Weight: 37865.77

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (ATP-BINDING DOMAIN OF PROTEIN MJ0577) A, B 162 Methanocaldococcus jannaschii Fragment: ATP-BINDING DOMAIN
Details: COMPLEXED WITH ADENOSINE-5'-TRIPHOSPHATE
Gene Name(s): MJ0577

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.210
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.53 α = 90.00
b = 96.08 β = 90.00
c = 37.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-11-04
  • Released Date: 1998-12-23
  • Deposition author(s): Zarembinski, T.I., Hung, L.-W., Mueller-Dieckmann, H.J., Kim, K.-K., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4