1M65

YCDX PROTEIN

Structural Biology Knowledgebase: 1M65 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1M65

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 27156.11

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein ycdX A 245 Escherichia coli EC#: 3.1.3 IUBMB
Gene Name(s): ycdX b1034 JW1017

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.177
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.23 α = 90.00
b = 77.23 β = 90.00
c = 79.99 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-12
  • Released Date: 2003-04-22
  • Deposition author(s): Teplyakov, A., Obmolova, G., Khil, P.P., Camerini-Otero, R.D., Gilliland, G.L., Structure 2 Function Project (S2F)

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4