1LJT

Crystal Structure of Macrophage Migration Inhibitory Factor complexed with (S,R)-3-(4-hydroxyphenyl)-4,5-dihydro-5-isoxazole-acetic acid methyl ester (ISO-1)

Structural Biology Knowledgebase: 1LJT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 1LJT

Classification: IMMUNE SYSTEM

Total Structure Weight: 37771.17

Macromolecule Entities
Molecule Chains Length Organism Details
Macrophage migration inhibitory factor A, B, C 114 Homo sapiens EC#: 5.3.2.1 IUBMB
Gene Name(s): MIF Gene View GLIF MMIF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HDI
Query on HDI

A, B, C 3-(4-HYDROXYPHENYL)-4,5-DIHYDRO-5-ISOXAZOLE- ACETIC ACID METHYL ESTER
C12 H13 N O4
AIXMJTYHQHQJLU-SNVBAGLBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HDI IC50: 7000 - 14410 nM (100) BindingDB

IC50: 7000 nM  BindingMOAD
IC50: 7000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.237
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.80 α = 90.00
b = 95.80 β = 90.00
c = 104.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-22
  • Released Date: 2002-11-27
  • Deposition author(s): Lubetsky, J.B., Dios, A., Han, J., Aljabari, B., Ruzsicska, B., Mitchell, R., Lolis, E., Al-Abed, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4