1LDJ

Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF Ubiquitin Ligase Complex

Structural Biology Knowledgebase: 1LDJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.247

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1LDJ

Classification: LIGASE

Total Structure Weight: 98926.64

Macromolecule Entities
Molecule Chains Length Organism Details
Cullin homolog 1 A 760 Homo sapiens Fragment: Residues 17-776
Gene Name(s): CUL1 Gene View
ring-box protein 1 B 90 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: Residues 19-108
Gene Name(s): RBX1 Gene View RNF75 ROC1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.247
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 113.97 α = 90.00
b = 49.97 β = 107.83
c = 135.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-08
  • Released Date: 2002-05-08
  • Deposition author(s): Zheng, N., Schulman, B.A., Song, L., Miller, J.J., Jeffrey, P.D., Wang, P., Chu, C., Koepp, D.M., Elledge, S.J., Pagano, M., Conaway, R.C., Conaway, J.W., Harper, J.W., Pavletich, N.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4