1KZL

Riboflavin Synthase from S.pombe bound to Carboxyethyllumazine

Structural Biology Knowledgebase: 1KZL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1KZL

Classification: TRANSFERASE

Total Structure Weight: 23860.53

Macromolecule Entities
Molecule Chains Length Organism Details
Riboflavin Synthase A 208 Schizosaccharomyces pombe EC#: 2.5.1.9 IUBMB
Gene Name(s): rib5 SPCC1450.13c

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CRM
Query on CRM

A 3-[8-((2S,3S,4R)-2,3,4,5-TETRAHYDROXYPENTYL)- 2,4,7-TRIOXO-1,3,8-TRIHYDROPTERIDIN-6-YL]PROPANOIC ACID
CARBOXYETHYLLUMAZINE (Synonym)
C14 H18 N4 O9
PTYCEIBBGGLADD-PJKMHFRUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HG
Query on HG

A MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.185
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 70.49 α = 90.00
b = 70.49 β = 90.00
c = 92.95 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-07
  • Released Date: 2002-11-06
  • Deposition author(s): Gerhardt, S., Schott, A.K., Kairies, N., Cushman, M., Illarionov, B., Eisenreich, W., Bacher, A., Huber, R., Steinbacher, S., Fischer, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4