1KX0

Rat mannose protein A (H189V I207V) complexed with man-a13-man

Structural Biology Knowledgebase: 1KX0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1KX0

Classification: IMMUNE SYSTEM SUGAR BINDING PROTEIN

Total Structure Weight: 50771.24

Macromolecule Entities
Molecule Chains Length Organism Details
MANNOSE-BINDING PROTEIN A A, B, C 149 Rattus norvegicus Fragment: residues 90-238 of P19999
Mutation: H189V, I207V
Gene Name(s): Mbl1

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAN
Query on MAN

A, B, C ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.201
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 79.08 α = 90.00
b = 85.11 β = 97.66
c = 97.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-30
  • Released Date: 2002-07-05
  • Deposition author(s): Ng, K.K., Kolatkar, A.R., Park-Snyder, S., Feinberg, H., Clark, D.A., Drickamer, K., Weis, W.I.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4