1KSG

Complex of Arl2 and PDE delta, Crystal Form 1

Structural Biology Knowledgebase: 1KSG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.255

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1KSG

Classification: SIGNALING PROTEIN / HYDROLASE

Total Structure Weight: 39166.95

Macromolecule Entities
Molecule Chains Length Organism Details
arf-like protein 2 A 186 Mus musculus Mutation: S33L
RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT B 152 Homo sapiens EC#: 3.1.4.17 IUBMB
Gene Name(s): PDE6D Gene View PDED
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.255
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.10 α = 90.00
b = 45.70 β = 94.00
c = 74.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-13
  • Released Date: 2002-05-08
  • Deposition author(s): Hanzal-Bayer, M., Renault, L., Roversi, P., Wittinghofer, A., Hillig, R.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4