1K5G

Crystal structure of Ran-GDP-AlFx-RanBP1-RanGAP complex

Structural Biology Knowledgebase: 1K5G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.250

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1K5G

Classification: SIGNALING PROTEIN / SIGNALING ACTIVATOR

Total Structure Weight: 366533.09

Macromolecule Entities
Molecule Chains Length Organism Details
GTP-binding nuclear protein RAN A, D, G, J 216 Homo sapiens Gene Name(s): RAN Gene View ARA24 OK/SW-cl.81
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ran-specific GTPase-activating protein B, E, H, K 201 Homo sapiens Gene Name(s): RANBP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ran GTPase activating protein 1 C, F, I, L 386 Schizosaccharomyces pombe Mutation: S2A
Gene Name(s): rna1 SPAC22E12.07
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, D, G, J GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AF3
Query on AF3

A, D, G, J ALUMINUM FLUORIDE
Al F3
KLZUFWVZNOTSEM-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, D, G, J MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.250
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.93 α = 71.67
b = 102.57 β = 79.09
c = 118.85 γ = 67.81

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-10
  • Released Date: 2002-02-13
  • Deposition author(s): Seewald, M.J., Koerner, C., Wittinghofer, A., Vetter, I.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4