1JLT

Vipoxin Complex

Structural Biology Knowledgebase: 1JLT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JLT

Classification: HYDROLASE

Total Structure Weight: 27747.35

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOLIPASE A2 INHIBITOR A 122 Vipera ammodytes Mutation: G35A
Gene Name(s):
PHOSPHOLIPASE A2 B 122 Vipera ammodytes EC#: 3.1.1.4 IUBMB
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.182
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 44.05 α = 90.00
b = 54.71 β = 90.00
c = 104.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-16
  • Released Date: 2001-10-31
  • Deposition author(s): Banumathi, S., Rajashankar, K.R., Notzel, C., Aleksiev, B., Singh, T.P., Genov, N., Betzel, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4