1J7E

A Structural Basis for the Unique Binding Features of the Human Vitamin D-binding Protein

Structural Biology Knowledgebase: 1J7E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1J7E

Classification: TRANSPORT LIGAND BINDING PROTEIN

Total Structure Weight: 104216.14

Macromolecule Entities
Molecule Chains Length Organism Details
vitamin D binding protein A, B 458 Homo sapiens Mutation: K420T
Gene Name(s): GC Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
JY
Query on JY

A, B 3-(2-{4-[2-(5-HYDROXY-2-METHYLENE-CYCLOHEXYLIDENE)- ETHYLIDENE]-7A-METHYL-OCTAHYDRO-INDEN-1-YL}- PROPYL)-PHENOL
24, (Synonym)
C28 H38 O2
FUULLJKQLABNSA-YPMWTJJSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
OLA
Query on OLA

A, B OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.213
  • Space Group: P 43
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 131.98 α = 90.00
b = 131.98 β = 90.00
c = 73.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-16
  • Released Date: 2002-02-06
  • Deposition author(s): Verboven, C., Rabijns, A., De Maeyer, M., Van Baelen, H., Bouillon, R., De Ranter, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4