1I4L

CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP IN COMPLEX WITH ARFAPTIN (P41)

Structural Biology Knowledgebase: 1I4L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.258

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1I4L

Classification: SIGNALING PROTEIN

Total Structure Weight: 73174.33

Macromolecule Entities
Molecule Chains Length Organism Details
ARFAPTIN 2 A, B 224 Homo sapiens Fragment: RESIDUES 118-341
Gene Name(s): ARFIP2 Gene View POR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 D 192 Homo sapiens Gene Name(s): RAC1 Gene View TC25 MIG5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

D GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.258
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 112.38 α = 90.00
b = 112.38 β = 90.00
c = 68.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-02-22
  • Released Date: 2001-05-16
  • Deposition author(s): Tarricone, C., Xiao, B., Justin, N., Gamblin, S.J., Smerdon, S.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4