1H1W

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE HUMAN PDK1 CATALYTIC DOMAIN

Structural Biology Knowledgebase: 1H1W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1H1W

Classification: TRANSFERASE

Total Structure Weight: 35177.00

Macromolecule Entities
Molecule Chains Length Organism Details
3-PHOSPHOINOSITIDE DEPENDENT PROTEIN KINASE-1 A 289 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE CATALYTIC DOMAIN, RESIDUES 71-359
Details: ACTIVATION LOOP PHOSPHORYLATION (SER241)
Gene Name(s): PDPK1 Gene View PDK1 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.196
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 123.01 α = 90.00
b = 123.01 β = 90.00
c = 47.62 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-23
  • Released Date: 2003-07-17
  • Deposition author(s): Biondi, R.M., Komander, D., Thomas, C.C., Lizcano, J.M., Deak, M., Alessi, D.R., Van Aalten, D.M.F.

Revision History

  • 2011-09-14
    Type: Version format compliance | Details: REMARK 4
  • 2011-09-14
    Type: Polymer description | Details: COMPND
  • 2011-09-14
    Type: Source and taxonomy | Details: SOURCE
  • 2011-09-14
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-09-14
    Type: Geometry validation | Details: REMARK 500
  • 2011-09-14
    Type: Refinement description | Details: REMARK 3
  • 2011-09-14
    Type: Other | Details: REMARK 375,REMARK 525
  • 2011-09-14
    Type: Biological assembly | Details: REMARK 300,REMARK 350