1H16

Pyruvate Formate-Lyase (E.coli) in complex with Pyruvate and CoA

Structural Biology Knowledgebase: 1H16 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1H16

Classification: TRANSFERASE

Total Structure Weight: 87196.36

Macromolecule Entities
Molecule Chains Length Organism Details
FORMATE ACETYLTRANSFERASE 1 A 759 Escherichia coli EC#: 2.3.1.54 IUBMB
Details: COMPLEX OF PYRUVATE FORMATE-LYASE WITH ITS SUBSTRATES PYRUVATE AND COA
Gene Name(s): pflB pfl b0903 JW0886

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DTL
Query on DTL

A L-TREITOL
C4 H10 O4
UNXHWFMMPAWVPI-IMJSIDKUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PYR
Query on PYR

A PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.145
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.90 α = 90.00
b = 153.05 β = 90.00
c = 205.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-03
  • Released Date: 2002-11-01
  • Deposition author(s): Becker, A., Kabsch, W.

Revision History

  • 2015-06-10
    Type: Function and keywords | Details: KEYWDS
  • 2015-06-10
    Type: Citation | Details: JRNL
  • 2015-06-10
    Type: Non-polymer description | Details: FORMUL,REMARK 620,HETNAM
  • 2015-06-10
    Type: Version format compliance | Details: REMARK 4
  • 2015-06-10
    Type: Refinement description | Details: REMARK 3
  • 2015-06-10
    Type: Other | Details: REMARK 100,SCALE3,REMARK 525,MASTER
  • 2015-06-10
    Type: Linkage | Details: CONECT,LINK