1GM5

STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION

Structural Biology Knowledgebase: 1GM5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.24 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.272

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GM5

Classification: HELICASE

Total Structure Weight: 105537.34


Macromolecule Entities
Molecule Chains Length Organism Details
RECG A 780 Thermotoga maritima Gene Name(s): TM_0205
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-(*CP*AP*GP*CP*TP*CP*CP*AP*TP*GP*AP*TP* CP*AP*TP*TP*GP*GP*CP*A)-3') X 20 synthetic
DNA (5'-(*GP*CP*AP*GP*TP*GP*CP*TP*CP*GP*CP*AP* TP*GP*GP*AP*GP*CP*TP*G)-3') Y 20 synthetic
DNA (5'-(*GP*AP*GP*CP*AP*CP*TP*GP*C)-3') Z 9 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.24 Å
  • R-Value Free: 0.328
  • R-Value Work: 0.272
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 133.70 α = 90.00
b = 144.60 β = 113.82
c = 84.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-11
  • Released Date: 2001-10-03
  • Deposition author(s): Singleton, M.R., Scaife, S., Wigley, D.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4