1GD9

CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1

Structural Biology Knowledgebase: 1GD9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1GD9

Classification: TRANSFERASE

Total Structure Weight: 88416.69

Macromolecule Entities
Molecule Chains Length Organism Details
ASPARTATE AMINOTRANSFERASE A, B 389 Pyrococcus horikoshii EC#: 2.6.1 IUBMB
Gene Name(s): PH1371

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.210
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.67 α = 90.00
b = 122.28 β = 90.00
c = 127.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-22
  • Released Date: 2001-09-22
  • Deposition author(s): Ura, H., Harata, K., Matsui, I., Kuramitsu, S.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4