1G69

THIAMIN PHOSPHATE SYNTHASE

Structural Biology Knowledgebase: 1G69 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1G69

Classification: TRANSFERASE

Total Structure Weight: 49959.08

Macromolecule Entities
Molecule Chains Length Organism Details
THIAMIN PHOSPHATE SYNTHASE A, B 228 Bacillus subtilis EC#: 2.5.1.3 IUBMB
Mutation: S130A
Details: COMPLEXED WITH 2-METHYL-5-METHYLENE-5H-PYRIMIDIN-4-YLIDENEAMINE, 4-METHYL-5-HYDROXYETHYLTHIAZOLE PHOSPHATE AND PYROPHOSPHATE
Gene Name(s): thiE thiC ywbK BSU38290 ipa-26d
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TZP
Query on TZP

A, B 4-METHYL-5-HYDROXYETHYLTHIAZOLE PHOSPHATE
C6 H10 N O4 P S
OCYMERZCMYJQQO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
POP
Query on POP

A, B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ICP
Query on ICP

A, B 2-METHYL-5-METHYLENE-5H-PYRIMIDIN-4-YLIDENEAMINE
4-IMINO-5-METHIDYL-2-METHYLPYRIMIDINE (Synonym)
C6 H7 N3
AXFPKNUSOMMYRV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.215
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.48 α = 90.00
b = 76.48 β = 90.00
c = 139.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-03
  • Released Date: 2001-09-26
  • Deposition author(s): Peapus, D.H., Chiu, H.-J., Campobasso, N., Reddick, J.J., Begley, T.P., Ealick, S.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4