1FDY

N-ACETYLNEURAMINATE LYASE IN COMPLEX WITH HYDROXYPYRUVATE

Structural Biology Knowledgebase: 1FDY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Observed: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FDY

Classification: LYASE

Total Structure Weight: 130922.77

Macromolecule Entities
Molecule Chains Length Organism Details
N-ACETYLNEURAMINATE LYASE A, B, C, D 297 Escherichia coli EC#: 4.1.3.3 IUBMB
Mutation: A70G, S84T
Details: COVALENT COMPLEX
Gene Name(s): nanA npl b3225 JW3194

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3PY
Query on 3PY

A, B, C, D 3-HYDROXYPYRUVIC ACID
C3 H4 O4
HHDDCCUIIUWNGJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Observed: 0.219
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.00 α = 90.00
b = 121.00 β = 90.00
c = 196.82 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-07-08
  • Released Date: 1997-10-22
  • Deposition author(s): Lawrence, M.C., Barbosa, J.A.R.G., Smith, B.J., Hall, N.E., Pilling, P.A., Ooi, H.C., Marcuccio, S.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4