1EFM

STRUCTURE OF THE GDP DOMAIN OF EF-TU AND LOCATION OF THE AMINO ACIDS HOMOLOGOUS TO RAS ONCOGENE PROTEINS

Structural Biology Knowledgebase: 1EFM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1EFM

Classification: ELONGATION FACTOR

Total Structure Weight: 42119.51

Macromolecule Entities
Molecule Chains Length Organism Details
ELONGATION FACTOR TU A 379 Escherichia coli Mutation: ΔA43, ΔR44, ΔA45, ΔF46, ΔD47, ΔQ48, ΔI49, ΔD50, ΔN51, ΔA52, ΔP53, ΔE54, ΔE55, ΔK56
Gene Name(s): tufB b3980 JW3943

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed:
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 98.61 α = 90.00
b = 100.81 β = 90.00
c = 162.46 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1987-05-29
  • Released Date: 1987-07-16
  • Deposition author(s): Jurnak, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4