1DQE

BOMBYX MORI PHEROMONE BINDING PROTEIN

Structural Biology Knowledgebase: 1DQE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DQE

Classification: TRANSPORT PROTEIN

Total Structure Weight: 31232.00

Macromolecule Entities
Molecule Chains Length Organism Details
PHEROMONE-BINDING PROTEIN A, B 137 Bombyx mori Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BOM
Query on BOM

A, B HEXADECA-10,12-DIEN-1-OL
BOMBYKOL (Synonym)
C16 H30 O
CIVIWCVVOFNUST-SCFJQAPRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.210
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.18 α = 90.00
b = 53.18 β = 90.00
c = 191.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-04
  • Released Date: 2001-01-10
  • Deposition author(s): Sandler, B.H., Nikonova, L., Leal, W.S., Clardy, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4