1D66

DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX

Structural Biology Knowledgebase: 1D66 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1D66

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 27737.04


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (GAL4) A, B 66 Saccharomyces cerevisiae Gene Name(s): GAL4 YPL248C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3') D 19 synthetic
DNA (5'-D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3') E 19 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed: 0.230
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 80.85 α = 90.00
b = 80.85 β = 90.00
c = 73.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1992-03-06
  • Released Date: 1992-03-06
  • Deposition author(s): Marmorstein, R., Carey, M., Ptashne, M., Harrison, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4