1BPZ

HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA

Structural Biology Knowledgebase: 1BPZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Observed: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1BPZ

Classification: TRANSFERASE / DNA

Total Structure Weight: 48042.50


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (DNA POLYMERASE BETA) A 335 Homo sapiens EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Gene Name(s): POLB Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') T 16 synthetic
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3') P 11 synthetic
DNA (5'-D(*GP*TP*CP*GP*G)-3') D 5 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Observed: 0.243
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.53 α = 90.00
b = 78.66 β = 107.54
c = 54.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-04-14
  • Released Date: 1997-06-16
  • Deposition author(s): Sawaya, M.R., Prasad, R., Wilson, S.H., Kraut, J., Pelletier, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4