1BKJ

NADPH:FMN OXIDOREDUCTASE FROM VIBRIO HARVEYI

Structural Biology Knowledgebase: 1BKJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1BKJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 53770.25

Macromolecule Entities
Molecule Chains Length Organism Details
NADPH-FLAVIN OXIDOREDUCTASE A, B 240 Vibrio harveyi EC#: 1.6.99 IUBMB
Gene Name(s): frp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FMN N/A in BindingDB
Kd: 170 nM  BindingMOAD
Kd: 170 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.175
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.20 α = 90.00
b = 85.90 β = 109.30
c = 58.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-08
  • Released Date: 1999-01-13
  • Deposition author(s): Tanner, J.J., Lei, B., TU, S.-C., Krause, K.L.
  • Previous versions: 1CUM

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4