1APY

HUMAN ASPARTYLGLUCOSAMINIDASE

Structural Biology Knowledgebase: 1APY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1APY

Classification: HYDROLASE

Total Structure Weight: 66007.38

Macromolecule Entities
Molecule Chains Length Organism Details
ASPARTYLGLUCOSAMINIDASE A, C 162 Homo sapiens EC#: 3.5.1.26 IUBMB
Gene Name(s): AGA Gene View
ASPARTYLGLUCOSAMINIDASE B, D 141 Homo sapiens EC#: 3.5.1.26 IUBMB
Gene Name(s): AGA Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

D BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.169
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 98.40 α = 90.00
b = 98.40 β = 90.00
c = 134.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-06-14
  • Released Date: 1996-12-23
  • Deposition author(s): Rouvinen, J., Oinonen, C.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4