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Molecular Recognition of RNA by Neomycin and a Restricted Neomycin Derivative
DOI:10.2210/pdb1zz5/pdb   NDB ID: DR0013
1ZZ5
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 21004.57
    Molecule: 5'-R(*GP*UP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*GP*G)-3'
    Polymer: 1 Type: rna Length: 15
    Chains: A, C
    Fragment: Ribosomal RNA A-site
    Molecule: 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*AP*CP*C)-3'
    Polymer: 2 Type: rna Length: 14
    Chains: B, D
    Fragment: Ribosomal RNA A-site
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1ZX7   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CNY
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    CNY C23 H44 N6 O12
    13,15-DIAMINO-2-(AMINOMETHYL)-3,4,9,12-TETRAHYDROXYHEXADECAHYDRO- 2H-7,10-EPOXYPYRANO[2,3-B][1,10,4]BENZODIOXAZACYCLODODECIN- 8-YL 2,6-DIAMINO-2,6-DIDEOXYHEXOPYRANOSIDE
    CNY:1ZZ5
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: DR0013
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Zhao, Q.,  Zhao, F.,  Blount, K.F.,  Han, Q.,  Tor, Y.,  Hermann, T.

    Deposition:   2005-06-13
    Release:   2005-09-20
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.00
    R-Value: 0.233 (work)
    R-Free: 0.281
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 50.74 α = 90.00 
    b = 50.75 β = 90.00 
    c = 144.72 γ = 90.00