1ZVV

Crystal structure of a ccpa-crh-dna complex

Structural Biology Knowledgebase: 1ZVV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 1ZVV

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 154510.02


Macromolecule Entities
Molecule Chains Length Organism Details
Glucose-resistance amylase regulator A, B, G 332 Bacillus subtilis Mutation: T87S, E105Q, Q320E
Gene Name(s): ccpA alsA amyR graR BSU29740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HPr-like protein crh J, P, W 85 Bacillus subtilis Mutation: V33I, V55I, V61I
Gene Name(s): crh yvcM BSU34740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA recognition strand CRE O, R, T 16 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B, G, O, P IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
J, P, W L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.98 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.235
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.69 α = 90.00
b = 158.10 β = 100.73
c = 125.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-06-02
  • Released Date: 2006-02-07
  • Deposition author(s): Schumacher, M.A., Brennan, R.G., Hillen, W., Seidel, G.

Revision History

  • 2017-01-11
    Type: Other | Details: Updated base pair information
  • 2012-08-22
    Type: Other | Details: updated related structure PDB ID
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4