1ZD0

Crystal structure of Pfu-542154 conserved hypothetical protein

• PDB DOI: https://doi.org/10.2210/pdb1ZD0/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Pyrococcus furiosus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2005-04-13 Released: 2005-05-17 
• Deposition Author(s): Habel, J.E., Liu, Z.J., Horanyi, P.S., Florence, Q.J.T., Tempel, W., Zhou, W., Chen, L., Lee, D., Nguyen, J., Chang, S.H., Bereton, P., Izumi, M., Jenny Jr., F.E., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.252 
• R-Value Work: 0.202 

Literature

Crystal structure of Pfu-542154 conserved hypothetical protein

Habel, J.E., Liu, Z.J., Horanyi, P.S., Florence, Q.J.T., Tempel, W., Zhou, W., Chen, L., Lee, D., Nguyen, J., Chang, S.H., Bereton, P., Izumi, M., Jenny Jr., F.E., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Rose, J.P., Wang, B.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 16.97 kDa 
• Atom Count: 1,252 
• Modelled Residue Count: 141 
• Deposited Residue Count: 150 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein PF0523	A	150	Pyrococcus furiosus	Mutation(s): 0  Gene Names: PF0523
UniProt
Find proteins for Q8U3E5 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8U3E5  Go to UniProtKB:  Q8U3E5

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MOH	P [auth A], Q [auth A], R [auth A]	METHANOL C H4 O OKKJLVBELUTLKV-UHFFFAOYSA-N
MG	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N
UNX	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth A], I [auth A], J [auth A], K [auth A], L [auth A], M [auth A], N [auth A], O [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.252 
• R-Value Work: 0.202 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.46	α = 90
b = 53.46	β = 90
c = 85.7	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-05-17 
Deposition Author(s): Habel, J.E., Liu, Z.J., Horanyi, P.S., Florence, Q.J.T., Tempel, W., Zhou, W., Chen, L., Lee, D., Nguyen, J., Chang, S.H., Bereton, P., Izumi, M., Jenny Jr., F.E., Poole II, F.L., Shah, C., Sugar, F.J., Adams, M.W.W., Rose, J.P., Wang, B.C., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History  

• Version 1.0: 2005-05-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-11
  Changes: Refinement description