1Z41

Crystal structure of oxidized YqjM from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1Z41

Classification: OXIDOREDUCTASE

Total Structure Weight: 77590.70

Macromolecule Entities
Molecule Chains Length Organism Details
Probable NADH-dependent flavin oxidoreductase yqjM A, B 338 Bacillus subtilis EC#: 1.6.99.1 IUBMB
Mutation: M1M, M14M, M22M, M25M, M27M, M42M, M134M, M238M, M278M, M285M, M291M
Gene Name(s): namA yqjM BSU23820
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.189
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 51.51 α = 90.00
b = 185.23 β = 90.00
c = 169.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-15
  • Released Date: 2005-05-17
  • Deposition author(s): Kitzing, K., Fitzpatrick, T.B., Wilken, C., Sawa, J., Bourenkov, G.P., Macheroux, P., Clausen, T.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4