1Z1C

Structural Determinants of Tissue Tropism and In Vivo Pathogenicity for the Parvovirus Minute virus of Mice

Structural Biology Knowledgebase: 1Z1C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.325

Literature

Macromolecules
Sequence Display for 1Z1C

Classification: Virus / DNA

Total Structure Weight: 71416.88


Macromolecule Entities
Molecule Chains Length Organism Details
Coat protein VP2 A 587 Rodent protoparvovirus 1 Mutation: V366M, A455T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*TP*CP*CP*TP*CP*TP*AP*TP*CP*AP*C)-3' B 12 synthetic
5'-D(*AP*CP*AP*CP*CP*AP*AP*AP*A)-3' C 9 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D5M
Query on D5M

B 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O6 P
KHWCHTKSEGGWEX-RRKCRQDMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.325
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 448.70 α = 90.00
b = 416.70 β = 95.80
c = 305.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-03-03
  • Released Date: 2005-09-06
  • Deposition author(s): Kontou, M., Govindasamy, L., Nam, H.J., Bryant, N., Llamas-Saiz, A.L., Foces-Foces, C., Hernando, E., Rubio, M.P., McKenna, R., Almendral, J.M., Agbandje-McKenna, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4