1YVB

the Plasmodium falciparum Cysteine Protease Falcipain-2

Structural Biology Knowledgebase: 1YVB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YVB

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 39867.41

Macromolecule Entities
Molecule Chains Length Organism Details
falcipain 2 A 241 Plasmodium falciparum EC#: 3.4.22 IUBMB
Mutation: K0KR, N0ME, T82P, D84G
Gene Name(s):
Cystatin I 111 Gallus gallus Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.232
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.04 α = 90.00
b = 96.04 β = 90.00
c = 124.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-15
  • Released Date: 2006-03-28
  • Deposition author(s): Wang, S.X.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4