Crystal structure of selenium-modified Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
DOI:10.2210/pdb1yls/pdb   NDB ID: UR0055
1YLS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 33541.98
    Molecule: RNA Diels-Alder ribozyme
    Polymer: 1 Type: rna Length: 11
    Chains: A, C
    Details: 11-mer
    Molecule: RNA Diels-Alder ribozyme
    Polymer: 2 Type: rna Length: 38
    Chains: B, D
    Mutation: A27G
    Details: 38-mer
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1YKQ   Crystal structure of Diels-Alder ribozyme 
    1YKV   Crystal structure of Diels-Alder ribozyme complexed with the reaction product 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DAI
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    DAI C24 H25 N O3
    (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A- TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE- 1,3(2H)-DIONE
    DAI:1YLS
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UMS
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    UMS C10 H15 N2 O8 P Se DU dnaLinking
    CSL
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    CSL C10 H16 N3 O7 P Se DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:UR0055
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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