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Crystal structure of the Diels-Alder ribozyme complexed with the product of the reaction between N-pentylmaleimide and covalently attached 9-hydroxymethylanthracene
DOI:10.2210/pdb1ykv/pdb   NDB ID: UR0054
1YKV
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 32440.21
    Molecule: Diels-Alder ribozyme
    Polymer: 1 Type: rna Length: 11
    Chains: A, C
    Details: 11-mer
    Molecule: Diels-Alder ribozyme
    Polymer: 2 Type: rna Length: 38
    Chains: B, D
    Details: 38-mer
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1YKQ  The same ribozyme complexed with the reaction product 
    1YLS   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DAI
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    DAI C24 H25 N O3
    (3AS,9AS)-2-PENTYL-4-HYDROXYMETHYL-3A,4,9,9A- TETRAHYDRO-4,9[1',2']-BENZENO-1H-BENZ[F]ISOINDOLE- 1,3(2H)-DIONE
    DAI:1YKV
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: UR0054
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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