1YDO

Crystal Structure of the Bacillis subtilis HMG-CoA Lyase, Northeast Structural Genomics Target SR181.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.263

Literature

Macromolecules
Sequence Display for 1YDO

Classification: LYASE

Total Structure Weight: 136822.25

Macromolecule Entities
Molecule Chains Length Organism Details
HMG-CoA Lyase A, B, C, D 307 Bacillus subtilis Mutation: M1M, M102M, M219M, M225M, M258M, M262M, M284M
Gene Name(s): yngG BSU18230
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B, C, D IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.263
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 62.69 α = 90.00
b = 104.67 β = 107.43
c = 97.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-12-24
  • Released Date: 2005-07-05
  • Deposition author(s): Forouhar, F., Hussain, M., Edstrom, W., Vorobiev, S.M., Xiao, R., Ciano, M., Shih, L., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History

  • Version 1_0: 2005-07-05

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Source and taxonomy, Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description